Done on the re-built firmware with Input shaping and jerk.
This firmware is working after a reset of input shaping.

SENT: m503
SENT: M105
READ: ok P0 B0
; Linear Units:
READ: echo:  G21 ; (mm)
G21 ; (mm)
READ: echo:; Temperature Units:
; Temperature Units:
READ: echo:  M149 C ; Units in Celsius
M149 C ; Units in Celsius
READ: echo:; Filament settings (Disabled):
; Filament settings (Disabled):
READ: echo:  M200 S0 D1.75
M200 S0 D1.75
READ: echo:; Steps per unit:
; Steps per unit:
READ: echo:  M92 X80.00 Y80.00 Z400.00 E141.10
M92 X80.00 Y80.00 Z400.00 E141.10
READ: echo:; Max feedrates (units/s):
; Max feedrates (units/s):
READ: echo:  M203 X150.00 Y150.00 Z40.00 E70.00
M203 X150.00 Y150.00 Z40.00 E70.00
READ: echo:; Max Acceleration (units/s2):
; Max Acceleration (units/s2):
READ: echo:  M201 X2500.00 Y2500.00 Z100.00 E10000.00
M201 X2500.00 Y2500.00 Z100.00 E10000.00
READ: echo:; Acceleration (units/s2) (P<print-accel> R<retract-accel> T<travel-accel>):
; Acceleration (units/s2) (P<print-accel> R<retract-accel> T<travel-accel>):
READ: echo:  M204 P2200.00 R1000.00 T2600.00
M204 P2200.00 R1000.00 T2600.00
READ: echo:; Advanced (B<min_segment_time_us> S<min_feedrate> T<min_travel_feedrate> J<junc_dev>):
; Advanced (B<min_segment_time_us> S<min_feedrate> T<min_travel_feedrate> J<junc_dev>):
READ: echo:  M205 B20000.00 S0.00 T0.00 J0.03
M205 B20000.00 S0.00 T0.00 J0.03
READ: echo:; Home offset:
; Home offset:
READ: echo:  M206 X0.00 Y0.00 Z0.00
M206 X0.00 Y0.00 Z0.00
READ: echo:; Mesh Bed Leveling:
; Mesh Bed Leveling:
READ: echo:  M420 S1 Z5.00 ; Leveling ON
M420 S1 Z5.00 ; Leveling ON
READ: echo:  G29 S3 I0 J0 Z0.00000
G29 S3 I0 J0 Z0.00000
READ: echo:  G29 S3 I1 J0 Z-0.02500
G29 S3 I1 J0 Z-0.02500
READ: echo:  G29 S3 I2 J0 Z-0.00190
G29 S3 I2 J0 Z-0.00190
READ: echo:  G29 S3 I0 J1 Z-0.00890
G29 S3 I0 J1 Z-0.00890
READ: echo:  G29 S3 I1 J1 Z0.00000
G29 S3 I1 J1 Z0.00000
READ: echo:  G29 S3 I2 J1 Z0.00000
G29 S3 I2 J1 Z0.00000
READ: echo:  G29 S3 I0 J2 Z-0.03190
G29 S3 I0 J2 Z-0.03190
READ: echo:  G29 S3 I1 J2 Z-0.07890
G29 S3 I1 J2 Z-0.07890
READ: echo:  G29 S3 I2 J2 Z-0.05790
G29 S3 I2 J2 Z-0.05790
READ: echo:  G29 S4 Z-0.08990
G29 S4 Z-0.08990
READ: echo:; Material heatup parameters:
; Material heatup parameters:
READ: echo:  M145 S0 H217.00 B65.00 F0
M145 S0 H217.00 B65.00 F0
READ: echo:  M145 S1 H235.00 B75.00 F0
M145 S1 H235.00 B75.00 F0
READ: echo:  M145 S2 H240.00 B90.00 F0
M145 S2 H240.00 B90.00 F0
READ: echo:; Hotend PID:
; Hotend PID:
READ: echo:  M301 P25.20 I2.32 D68.53
M301 P25.20 I2.32 D68.53
READ: echo:; Bed PID:
; Bed PID:
READ: echo:  M304 P70.02 I13.26 D246.47
M304 P70.02 I13.26 D246.47
READ: echo:; Display Sleep:
; Display Sleep:
READ: echo:  M255 S5 ; (minutes)
M255 S5 ; (minutes)
READ: echo:; Input Shaping:
; Input Shaping:
READ: echo:  M593 X F38.11 D0.15
M593 X F38.11 D0.15
READ: echo:  M593 Y F54.11 D0.15
M593 Y F54.11 D0.15
READ: echo:; Linear Advance:
; Linear Advance:
READ: echo:  M900 K0.20
M900 K0.20
READ: echo:; Filament load/unload:
; Filament load/unload:
READ: echo:  M603 L200.00 U200.00 ; (mm)
M603 L200.00 U200.00 ; (mm)
READ: echo:; Filament runout sensor:
; Filament runout sensor:
READ: echo:  M412 S1 ; Sensor ON
M412 S1 ; Sensor ON